Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400024230 PGSC0003DMG400024230 |
chr04 | 18002651 | 18005326 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400062270 PGSC0003DMT400062270 PAC:24385452 |
Low | No | 2676 | Get ORF Coding potential... Type: noncoding Potential: -0.302 Folding energies... MFEI: -25.075 AMFE: -0.671 GC content %: 37.369 | |
Stuberosum_PGSC0003DMT400062271 PGSC0003DMT400062271 PAC:24385453 |
High | No | 1135 | Get ORF Coding potential... Type: noncoding Potential: -1.173 Folding energies... MFEI: -25.736 AMFE: -0.671 GC content %: 38.326 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400062270 | SwissProt | 2015-06-01 | P59584 | 8.0e-11 |
Stuberosum_PGSC0003DMT400062270 | RepBase (RepeatMasker) | 2014-01-31 | hAT-4_STu |