Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400026057 PGSC0003DMG400026057 |
chr01 | 75311487 | 75313415 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400067045 PGSC0003DMT400067045 PAC:24418756 |
Low | No | 1323 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -24.490 AMFE: -0.630 GC content %: 38.851 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400067045 | SwissProt | 2015-06-01 | Q9LHN8 | 3.0e-10 |
Stuberosum_PGSC0003DMT400067045 | RepBase (RepeatMasker) | 2014-01-31 | Copia-3_PTri-I |