Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400028173 PGSC0003DMG400028173 |
chr10 | 48412260 | 48413929 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400072405 PGSC0003DMT400072405 PAC:24413841 |
Low | No | 668 | Get ORF Coding potential... Type: noncoding Potential: -0.896 Folding energies... MFEI: -18.728 AMFE: -0.616 GC content %: 30.389 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400072405 | SwissProt | 2015-06-01 | Q8LA14 | 3.0e-10 |