Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400030126 PGSC0003DMG400030126 |
chr08 | 14425170 | 14425508 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400077467 PGSC0003DMT400077467 PAC:24390454 |
Low | No | 339 | Get ORF Coding potential... Type: noncoding Potential: -0.719 Folding energies... MFEI: -12.950 AMFE: -0.354 GC content %: 36.578 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400077467 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-42_STu-I |