Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400030214 PGSC0003DMG400030214 |
chr11 | 8916306 | 8919850 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400077651 PGSC0003DMT400077651 PAC:24409044 |
High | No | 914 | Get ORF Coding potential... Type: noncoding Potential: -1.074 Folding energies... MFEI: -25.810 AMFE: -0.645 GC content %: 40.044 | |
Stuberosum_PGSC0003DMT400077652 PGSC0003DMT400077652 PAC:24409045 |
High | No | 3545 | Get ORF Coding potential... Type: noncoding Potential: -1.223 Folding energies... MFEI: -26.307 AMFE: -0.731 GC content %: 35.966 |