Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400030216 PGSC0003DMG400030216 |
chr10 | 36701938 | 36706068 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400077657 PGSC0003DMT400077657 PAC:24410637 |
Low | No | 3009 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -22.559 AMFE: -0.685 GC content %: 32.935 | |
Stuberosum_PGSC0003DMT400077658 PGSC0003DMT400077658 PAC:24410638 |
Low | No | 3009 | Get ORF Coding potential... Type: noncoding Potential: -0.255 Folding energies... MFEI: -22.559 AMFE: -0.685 GC content %: 32.935 | |
Stuberosum_PGSC0003DMT400077660 PGSC0003DMT400077660 PAC:24410639 |
Low | No | 1888 | Get ORF Coding potential... Type: noncoding Potential: -1.013 Folding energies... MFEI: -23.930 AMFE: -0.685 GC content %: 34.958 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400077657 | RepBase (RepeatMasker) | 2014-01-31 | Caulimovirus-1_STu | |
Stuberosum_PGSC0003DMT400077658 | RepBase (RepeatMasker) | 2014-01-31 | Caulimovirus-1_STu | |
Stuberosum_PGSC0003DMT400077657 | SwissProt | 2015-06-01 | Q7G8V2 | 1.0e-4 |
Stuberosum_PGSC0003DMT400077658 | SwissProt | 2015-06-01 | Q7G8V2 | 1.0e-4 |
Stuberosum_PGSC0003DMT400077660 | SwissProt | 2015-06-01 | Q7G8V2 | 7.0e-5 |