Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400030447 PGSC0003DMG400030447 |
chr06 | 52849132 | 52852007 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400078238 PGSC0003DMT400078238 PAC:24395503 |
Low | No | 2381 | Get ORF Coding potential... Type: noncoding Potential: -0.961 Folding energies... MFEI: -26.056 AMFE: -0.669 GC content %: 38.933 | |
Stuberosum_PGSC0003DMT400078239 PGSC0003DMT400078239 PAC:24395504 |
Low | No | 2779 | Get ORF Coding potential... Type: noncoding Potential: -0.977 Folding energies... MFEI: -25.660 AMFE: -0.657 GC content %: 39.079 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400078239 | RepBase (RepeatMasker) | 2014-01-31 | RTE-1_STu | |
Stuberosum_PGSC0003DMT400078238 | SwissProt | 2015-06-01 | A1L209 | 8.0e-8 |
Stuberosum_PGSC0003DMT400078239 | SwissProt | 2015-06-01 | A1L209 | 1.0e-7 |
Stuberosum_PGSC0003DMT400078238 | RepBase (RepeatMasker) | 2014-01-31 | RTE-1_STu |