GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400030948 PGSC0003DMG400030948	chr01	92346485	92348287	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400079480 PGSC0003DMT400079480 PAC:24420489	High	No	624		Get ORF Coding potential... Type: noncoding Potential: -0.672 Folding energies... MFEI: -22.548 AMFE: -0.693 GC content %: 32.532
Stuberosum_PGSC0003DMT400079481 PGSC0003DMT400079481 PAC:24420488	High	No	627		Get ORF Coding potential... Type: noncoding Potential: -0.651 Folding energies... MFEI: -22.600 AMFE: -0.691 GC content %: 32.695
Stuberosum_PGSC0003DMT400079482 PGSC0003DMT400079482 PAC:24420490	High	No	724		Get ORF Coding potential... Type: noncoding Potential: -0.881 Folding energies... MFEI: -20.994 AMFE: -0.661 GC content %: 31.768

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).