GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG400032806 PGSC0003DMG400032806	chr08	26862985	26866905	Phytozome	v3.4	Solanum_tuberosum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400082768 PGSC0003DMT400082768 PAC:24390688	High	No	751		Get ORF Coding potential... Type: noncoding Potential: -0.901 Folding energies... MFEI: -24.807 AMFE: -0.636 GC content %: 39.015
Stuberosum_PGSC0003DMT400082769 PGSC0003DMT400082769 PAC:24390687	High	No	1213		Get ORF Coding potential... Type: noncoding Potential: -0.907 Folding energies... MFEI: -26.183 AMFE: -0.671 GC content %: 38.994

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).