Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400033118 PGSC0003DMG400033118 |
chr01 | 71224702 | 71226215 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400083205 PGSC0003DMT400083205 PAC:24420925 |
Low | No | 1514 | Get ORF Coding potential... Type: noncoding Potential: -0.835 Folding energies... MFEI: -20.357 AMFE: -0.669 GC content %: 30.449 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400083205 | SwissProt | 2015-06-01 | Q84WS0 | 4.0e-5 |