Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400035455 PGSC0003DMG400035455 |
chr06 | 17973182 | 17973532 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400085884 PGSC0003DMT400085884 PAC:24394755 |
Low | No | 351 | Get ORF Coding potential... Type: noncoding Potential: -0.670 Folding energies... MFEI: -25.157 AMFE: -0.516 GC content %: 48.718 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400085884 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-42_STu-I |