Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400039640 PGSC0003DMG400039640 |
chr06 | 28389822 | 28390592 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400090069 PGSC0003DMT400090069 PAC:24394988 |
Low | No | 237 | Get ORF Coding potential... Type: noncoding Potential: -0.337 Folding energies... MFEI: -18.734 AMFE: -0.463 GC content %: 40.506 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400090069 | RepBase (RepeatMasker) | 2014-01-31 | Copia-15_ST-I |