Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400041271 PGSC0003DMG400041271 |
chr02 | 27468020 | 27469147 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400091700 PGSC0003DMT400091700 PAC:24427539 |
Low | No | 249 | Get ORF Coding potential... Type: noncoding Potential: -1.064 Folding energies... MFEI: -24.538 AMFE: -0.531 GC content %: 46.185 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400091700 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-41_STu-I |