Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400042109 PGSC0003DMG400042109 |
chr12 | 24214966 | 24215471 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400092538 PGSC0003DMT400092538 PAC:24380412 |
Low | No | 318 | Get ORF Coding potential... Type: noncoding Potential: -0.757 Folding energies... MFEI: -23.774 AMFE: -0.501 GC content %: 47.484 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400092538 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-42_STu-LTR |