Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400043014 PGSC0003DMG400043014 |
chr12 | 30581540 | 30581854 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400093443 PGSC0003DMT400093443 PAC:24380319 |
Low | No | 315 | Get ORF Coding potential... Type: noncoding Potential: -0.233 Folding energies... MFEI: -21.365 AMFE: -0.499 GC content %: 42.857 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400093443 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-45_STu-I |