Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400043840 PGSC0003DMG400043840 |
chr10 | 13093309 | 13094219 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400094269 PGSC0003DMT400094269 PAC:24412723 |
Low | No | 339 | Get ORF Coding potential... Type: noncoding Potential: -0.610 Folding energies... MFEI: -20.383 AMFE: -0.443 GC content %: 46.018 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400094269 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-21_ST-I |