Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400044469 PGSC0003DMG400044469 |
chr07 | 25976263 | 25976607 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400094898 PGSC0003DMT400094898 PAC:24416917 |
Low | Yes | 345 | Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -36.609 AMFE: -0.694 GC content %: 52.754 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400094898 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-25_ST-LTR |