Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400044865 PGSC0003DMG400044865 |
chr01 | 8760807 | 8762476 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400095294 PGSC0003DMT400095294 PAC:24419223 |
Low | No | 213 | Get ORF Coding potential... Type: noncoding Potential: -0.414 Folding energies... MFEI: -30.329 AMFE: -0.587 GC content %: 51.643 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400095294 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-42_STu-I |