Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400046029 PGSC0003DMG400046029 |
chr09 | 14953025 | 14954913 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400096458 PGSC0003DMT400096458 PAC:24401036 |
Low | No | 219 | Get ORF Coding potential... Type: noncoding Potential: -0.713 Folding energies... MFEI: -26.164 AMFE: -0.526 GC content %: 49.772 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400096458 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-27_ST-I |