Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG400047057 PGSC0003DMG400047057 |
chr05 | 32729416 | 32729977 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400097486 PGSC0003DMT400097486 PAC:24388102 |
Low | No | 252 | Get ORF Coding potential... Type: noncoding Potential: -0.668 Folding energies... MFEI: -21.627 AMFE: -0.474 GC content %: 45.635 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400097486 | RepBase (RepeatMasker) | 2014-01-31 | Gypsy-42_STu-LTR |