Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG401010281 PGSC0003DMG401010281 |
chr10 | 35431665 | 35432124 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400026613 PGSC0003DMT400026613 PAC:24411648 |
Low | No | 460 | Get ORF Coding potential... Type: noncoding Potential: -1.007 Folding energies... MFEI: -20.957 AMFE: -0.574 GC content %: 36.522 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400026613 | SwissProt | 2015-06-01 | Q54TA1 | 8.0e-5 |