GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG401011174 PGSC0003DMG401011174	chr07	1768928	1773300	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400029039 PGSC0003DMT400029039 PAC:24416234	High	No	270		Get ORF Coding potential... Type: noncoding Potential: -0.695 Folding energies... MFEI: -25.185 AMFE: -0.642 GC content %: 39.259
Stuberosum_PGSC0003DMT400029041 PGSC0003DMT400029041 PAC:24416235	High	No	871		Get ORF Coding potential... Type: noncoding Potential: -1.159 Folding energies... MFEI: -24.696 AMFE: -0.674 GC content %: 36.625
Stuberosum_PGSC0003DMT400029042 PGSC0003DMT400029042 PAC:24416236	High	No	1149		Get ORF Coding potential... Type: noncoding Potential: -1.247 Folding energies... MFEI: -23.586 AMFE: -0.681 GC content %: 34.639
Stuberosum_PGSC0003DMT400029043 PGSC0003DMT400029043 PAC:24416237	High	No	532		Get ORF Coding potential... Type: noncoding Potential: -1.083 Folding energies... MFEI: -22.199 AMFE: -0.568 GC content %: 39.098

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).