Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG401011550 PGSC0003DMG401011550 |
chr12 | 62908263 | 62911823 | Phytozome | v3.4 | Solanum_tuberosum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400030173 PGSC0003DMT400030173 PAC:24379214 |
Low | No | 1256 | Get ORF Coding potential... Type: noncoding Potential: -1.021 Folding energies... MFEI: -23.838 AMFE: -0.637 GC content %: 37.420 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400030173 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-2_STu |