GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG401018519 PGSC0003DMG401018519	chr03	16848383	16850193	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400047651 PGSC0003DMT400047651 PAC:24404131	High	No	495		Get ORF Coding potential... Type: noncoding Potential: -0.802 Folding energies... MFEI: -26.202 AMFE: -0.574 GC content %: 45.657
Stuberosum_PGSC0003DMT400047654 PGSC0003DMT400047654 PAC:24404132	High	No	414		Get ORF Coding potential... Type: noncoding Potential: -1.188 Folding energies... MFEI: -24.251 AMFE: -0.591 GC content %: 41.063

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).