Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG401026002 PGSC0003DMG401026002 |
chr01 | 75254972 | 75255840 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400066889 PGSC0003DMT400066889 PAC:24421956 |
Low | No | 869 | Get ORF Coding potential... Type: noncoding Potential: -1.365 Folding energies... MFEI: -20.713 AMFE: -0.573 GC content %: 36.133 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400066889 | RepBase (RepeatMasker) | 2014-01-31 | Copia-88_ST-LTR |