Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG401027860 PGSC0003DMG401027860 |
chr04 | 61550646 | 61554678 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400071613 PGSC0003DMT400071613 PAC:24385689 |
Low | No | 2050 | Get ORF Coding potential... Type: noncoding Potential: -0.395 Folding energies... MFEI: -24.729 AMFE: -0.652 GC content %: 37.902 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400071613 | SwissProt | 2015-06-01 | Q54G02 | 8.0e-14 |