Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG402004751 PGSC0003DMG402004751 |
chr08 | 39343256 | 39347036 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400012103 PGSC0003DMT400012103 PAC:24391071 |
Low | No | 3781 | Get ORF Coding potential... Type: noncoding Potential: -1.100 Folding energies... MFEI: -25.319 AMFE: -0.686 GC content %: 36.921 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400012103 | RepBase (RepeatMasker) | 2014-01-31 | Copia-75_ST-I |