GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG402011586 PGSC0003DMG402011586	chr09	49327319	49329238	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400030290 PGSC0003DMT400030290 PAC:24401037	High	No	1491		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -24.017 AMFE: -0.634 GC content %: 37.894
Stuberosum_PGSC0003DMT400030291 PGSC0003DMT400030291 PAC:24401038	High	No	1491		Get ORF Coding potential... Type: noncoding Potential: -0.910 Folding energies... MFEI: -24.017 AMFE: -0.634 GC content %: 37.894

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).