Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG402022539 PGSC0003DMG402022539 |
chr03 | 6283353 | 6284627 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400058058 PGSC0003DMT400058058 PAC:24404110 |
Low | No | 1275 | Get ORF Coding potential... Type: noncoding Potential: -1.192 Folding energies... MFEI: -20.110 AMFE: -0.577 GC content %: 34.824 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400058058 | RepBase (RepeatMasker) | 2014-01-31 | SINE2-1_STu |