Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Stuberosum_PGSC0003DMG402028515 PGSC0003DMG402028515 |
chr06 | 43220783 | 43221756 | Phytozome | v3.4 | Solanum_tuberosum | Coding? No |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Stuberosum_PGSC0003DMT400073384 PGSC0003DMT400073384 PAC:24395741 |
Low | No | 974 | Get ORF Coding potential... Type: noncoding Potential: -1.107 Folding energies... MFEI: -22.639 AMFE: -0.586 GC content %: 38.604 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Stuberosum_PGSC0003DMT400073384 | SwissProt | 2015-06-01 | Q0JM76 | 3.0e-11 |