GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Stuberosum_PGSC0003DMG403031202 PGSC0003DMG403031202	chr04	45458601	45460760	Phytozome	v3.4	Solanum_tuberosum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Stuberosum_PGSC0003DMT400080156 PGSC0003DMT400080156 PAC:24384805	High	No	705		Get ORF Coding potential... Type: noncoding Potential: -0.266 Folding energies... MFEI: -20.085 AMFE: -0.553 GC content %: 36.312
Stuberosum_PGSC0003DMT400080157 PGSC0003DMT400080157 PAC:24384806	High	No	823		Get ORF Coding potential... Type: noncoding Potential: -0.677 Folding energies... MFEI: -20.474 AMFE: -0.577 GC content %: 35.480

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).