GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_073C8CC22 Traes_1AL_073C8CC22	ta_iwgsc_1al_v2_3849199	5	2622	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_073C8CC22.5 Traes_1AL_073C8CC22.5 PAC:31980122	Low	No	754		Get ORF Coding potential... Type: noncoding Potential: -0.122 Folding energies... MFEI: -23.289 AMFE: -0.547 GC content %: 42.573
Taestivum_Traes_1AL_073C8CC22.6 Traes_1AL_073C8CC22.6 PAC:31980123	High	No	632		Get ORF Coding potential... Type: noncoding Potential: -1.346 Folding energies... MFEI: -24.636 AMFE: -0.546 GC content %: 45.095

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).