GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_09486AD47 Traes_1AL_09486AD47	ta_iwgsc_1al_v2_3883449	3285	7680	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_09486AD47.3 Traes_1AL_09486AD47.3 PAC:31859466	High	No	1700		Get ORF Coding potential... Type: noncoding Potential: -1.131 Folding energies... MFEI: -24.388 AMFE: -0.617 GC content %: 39.529
Taestivum_Traes_1AL_09486AD47.4 Traes_1AL_09486AD47.4 PAC:31859467	High	No	438		Get ORF Coding potential... Type: noncoding Potential: -1.346 Folding energies... MFEI: -23.584 AMFE: -0.577 GC content %: 40.868

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).