GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_0E5202FA0 Traes_1AL_0E5202FA0	ta_iwgsc_1al_v2_3870127	5471	5931	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_0E5202FA0.1 Traes_1AL_0E5202FA0.1 PAC:31949394	High	No	461		Get ORF Coding potential... Type: noncoding Potential: -0.653 Folding energies... MFEI: -42.082 AMFE: -0.698 GC content %: 60.304
Taestivum_Traes_1AL_0E5202FA0.2 Traes_1AL_0E5202FA0.2 PAC:31949395	High	No	276		Get ORF Coding potential... Type: noncoding Potential: -0.516 Folding energies... MFEI: -48.877 AMFE: -0.710 GC content %: 68.841

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).