GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_0F16B1E3B1 Traes_1AL_0F16B1E3B1	ta_iwgsc_1al_v2_3892704	1	500	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_0F16B1E3B1.1 Traes_1AL_0F16B1E3B1.1 PAC:31938971	High	No	498		Get ORF Coding potential... Type: noncoding Potential: -0.615 Folding energies... MFEI: -39.197 AMFE: -0.574 GC content %: 68.273
Taestivum_Traes_1AL_0F16B1E3B1.2 Traes_1AL_0F16B1E3B1.2 PAC:31938970	High	No	326		Get ORF Coding potential... Type: noncoding Potential: -0.648 Folding energies... MFEI: -42.362 AMFE: -0.568 GC content %: 74.540

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).