Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
---|---|---|---|---|---|---|---|
Taestivum_Traes_1AL_12123508E Traes_1AL_12123508E |
ta_iwgsc_1al_v2_3900989 | 327 | 3858 | Phytozome | v2.2 | Triticum_aestivum | Coding? Yes |
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
---|---|---|---|---|---|
Taestivum_Traes_1AL_12123508E.1 Traes_1AL_12123508E.1 PAC:31775231 |
Low | No | 1433 | Get ORF Coding potential... Type: noncoding Potential: -1.034 Folding energies... MFEI: -28.486 AMFE: -0.656 GC content %: 43.405 | |
Taestivum_Traes_1AL_12123508E.3 Traes_1AL_12123508E.3 PAC:31775228 |
Low | No | 1337 | Get ORF Coding potential... Type: noncoding Potential: -1.076 Folding energies... MFEI: -29.514 AMFE: -0.670 GC content %: 44.054 | |
Taestivum_Traes_1AL_12123508E.4 Traes_1AL_12123508E.4 PAC:31775227 |
Low | No | 1954 | Get ORF Coding potential... Type: noncoding Potential: -1.125 Folding energies... MFEI: -27.293 AMFE: -0.685 GC content %: 39.867 | |
Taestivum_Traes_1AL_12123508E.5 Traes_1AL_12123508E.5 PAC:31775229 |
Low | No | 1133 | Get ORF Coding potential... Type: noncoding Potential: -0.851 Folding energies... MFEI: -25.861 AMFE: -0.645 GC content %: 40.071 | |
Taestivum_Traes_1AL_12123508E.6 Traes_1AL_12123508E.6 PAC:31775230 |
Low | No | 1562 | Get ORF Coding potential... Type: noncoding Potential: -0.938 Folding energies... MFEI: -26.620 AMFE: -0.682 GC content %: 39.052 |
Transcript alias | Database | Version | Hit | Evalue |
---|---|---|---|---|
Taestivum_Traes_1AL_12123508E.6 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Taestivum_Traes_1AL_12123508E.1 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Taestivum_Traes_1AL_12123508E.3 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Taestivum_Traes_1AL_12123508E.4 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM | |
Taestivum_Traes_1AL_12123508E.5 | RepBase (RepeatMasker) | 2014-01-31 | ICARUS_TM |