GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_1358DF21E Traes_1AL_1358DF21E	ta_iwgsc_1al_v2_3910209	3433	4627	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_1358DF21E.1 Traes_1AL_1358DF21E.1 PAC:31780452	High	No	318		Get ORF Coding potential... Type: noncoding Potential: -1.328 Folding energies... MFEI: -26.164 AMFE: -0.440 GC content %: 59.434
Taestivum_Traes_1AL_1358DF21E.2 Traes_1AL_1358DF21E.2 PAC:31780451	High	No	674		Get ORF Coding potential... Type: noncoding Potential: -1.068 Folding energies... MFEI: -26.246 AMFE: -0.504 GC content %: 52.077
Taestivum_Traes_1AL_1358DF21E.3 Traes_1AL_1358DF21E.3 PAC:31780453	High	No	816		Get ORF Coding potential... Type: noncoding Potential: -1.278 Folding energies... MFEI: -21.091 AMFE: -0.447 GC content %: 47.181
Taestivum_Traes_1AL_1358DF21E.4 Traes_1AL_1358DF21E.4 PAC:31780454	High	No	596		Get ORF Coding potential... Type: noncoding Potential: -1.277 Folding energies... MFEI: -18.020 AMFE: -0.358 GC content %: 50.336

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).