GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_251C12A4D Traes_1AL_251C12A4D	ta_iwgsc_1al_v2_3840377	1	4090	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_251C12A4D.12 Traes_1AL_251C12A4D.12 PAC:31868513	High	No	905		Get ORF Coding potential... Type: noncoding Potential: -0.829 Folding energies... MFEI: -29.227 AMFE: -0.648 GC content %: 45.083
Taestivum_Traes_1AL_251C12A4D.13 Traes_1AL_251C12A4D.13 PAC:31868514	High	No	845		Get ORF Coding potential... Type: noncoding Potential: -0.811 Folding energies... MFEI: -27.101 AMFE: -0.645 GC content %: 42.012

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).