GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_282B8F3D9 Traes_1AL_282B8F3D9	ta_iwgsc_1al_v2_322193	2182	5064	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_282B8F3D9.3 Traes_1AL_282B8F3D9.3 PAC:31735041	Low	No	1511		Get ORF Coding potential... Type: noncoding Potential: -0.750 Folding energies... MFEI: -35.288 AMFE: -0.653 GC content %: 54.004
Taestivum_Traes_1AL_282B8F3D9.4 Traes_1AL_282B8F3D9.4 PAC:31735040	Low	No	1179		Get ORF Coding potential... Type: noncoding Potential: -0.718 Folding energies... MFEI: -36.896 AMFE: -0.661 GC content %: 55.810
Taestivum_Traes_1AL_282B8F3D9.7 Traes_1AL_282B8F3D9.7 PAC:31735043	High	No	769		Get ORF Coding potential... Type: noncoding Potential: -0.561 Folding energies... MFEI: -34.161 AMFE: -0.658 GC content %: 51.886

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).