GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_2CFFBD60E Traes_1AL_2CFFBD60E	ta_iwgsc_1al_v2_3962736	808	8302	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_2CFFBD60E.8 Traes_1AL_2CFFBD60E.8 PAC:31932049	High	No	1205		Get ORF Coding potential... Type: noncoding Potential: -1.230 Folding energies... MFEI: -25.461 AMFE: -0.590 GC content %: 43.154
Taestivum_Traes_1AL_2CFFBD60E.9 Traes_1AL_2CFFBD60E.9 PAC:31932050	Low	No	4726		Get ORF Coding potential... Type: noncoding Potential: -0.023 Folding energies... MFEI: -24.966 AMFE: -0.612 GC content %: 40.817

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).