Gene
Taestivum Traes 1AL 2D05BFB1A
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_2D05BFB1A Traes_1AL_2D05BFB1A |
ta_iwgsc_1al_v2_3942452 | 2083 | 5136 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_2D05BFB1A.1 Traes_1AL_2D05BFB1A.1 PAC:31969994 |
High | No | 717 | Get ORF Coding potential... Type: noncoding Potential: -0.942 Folding energies... MFEI: -32.315 AMFE: -0.649 GC content %: 49.791 | |
| Taestivum_Traes_1AL_2D05BFB1A.2 Traes_1AL_2D05BFB1A.2 PAC:31969991 |
High | No | 918 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -31.340 AMFE: -0.639 GC content %: 49.020 | |
| Taestivum_Traes_1AL_2D05BFB1A.3 Traes_1AL_2D05BFB1A.3 PAC:31969993 |
High | No | 894 | Get ORF Coding potential... Type: noncoding Potential: -0.994 Folding energies... MFEI: -30.996 AMFE: -0.637 GC content %: 48.658 | |
| Taestivum_Traes_1AL_2D05BFB1A.4 Traes_1AL_2D05BFB1A.4 PAC:31969992 |
High | No | 915 | Get ORF Coding potential... Type: noncoding Potential: -0.999 Folding energies... MFEI: -30.634 AMFE: -0.633 GC content %: 48.415 | |
| Taestivum_Traes_1AL_2D05BFB1A.5 Traes_1AL_2D05BFB1A.5 PAC:31969995 |
High | No | 959 | Get ORF Coding potential... Type: noncoding Potential: -1.115 Folding energies... MFEI: -28.644 AMFE: -0.642 GC content %: 44.630 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
