Gene
Taestivum Traes 1AL 32AC149F6
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_32AC149F6 Traes_1AL_32AC149F6 |
ta_iwgsc_1al_v2_3890469 | 1489 | 3494 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_32AC149F6.1 Traes_1AL_32AC149F6.1 PAC:32007560 |
Low | No | 762 | Get ORF Coding potential... Type: noncoding Potential: -0.144 Folding energies... MFEI: -34.121 AMFE: -0.672 GC content %: 50.787 | |
| Taestivum_Traes_1AL_32AC149F6.2 Traes_1AL_32AC149F6.2 PAC:32007557 |
Low | No | 661 | Get ORF Coding potential... Type: noncoding Potential: -0.451 Folding energies... MFEI: -33.994 AMFE: -0.677 GC content %: 50.227 | |
| Taestivum_Traes_1AL_32AC149F6.3 Traes_1AL_32AC149F6.3 PAC:32007559 |
Low | No | 765 | Get ORF Coding potential... Type: noncoding Potential: -0.132 Folding energies... MFEI: -34.052 AMFE: -0.670 GC content %: 50.850 | |
| Taestivum_Traes_1AL_32AC149F6.4 Traes_1AL_32AC149F6.4 PAC:32007561 |
High | No | 300 | Get ORF Coding potential... Type: noncoding Potential: -0.637 Folding energies... MFEI: -22.833 AMFE: -0.515 GC content %: 44.333 | |
| Taestivum_Traes_1AL_32AC149F6.5 Traes_1AL_32AC149F6.5 PAC:32007562 |
High | No | 360 | Get ORF Coding potential... Type: noncoding Potential: -0.329 Folding energies... MFEI: -25.500 AMFE: -0.577 GC content %: 44.167 | |
| Taestivum_Traes_1AL_32AC149F6.6 Traes_1AL_32AC149F6.6 PAC:32007558 |
Low | No | 553 | Get ORF Coding potential... Type: noncoding Potential: -0.038 Folding energies... MFEI: -32.423 AMFE: -0.594 GC content %: 54.611 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
