Gene
Taestivum Traes 1AL 3B3B8D793
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_3B3B8D793 Traes_1AL_3B3B8D793 |
ta_iwgsc_1al_v2_3892002 | 4721 | 14178 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_3B3B8D793.1 Traes_1AL_3B3B8D793.1 PAC:31819773 |
High | No | 536 | Get ORF Coding potential... Type: noncoding Potential: -1.029 Folding energies... MFEI: -23.601 AMFE: -0.527 GC content %: 44.776 | |
| Taestivum_Traes_1AL_3B3B8D793.2 Traes_1AL_3B3B8D793.2 PAC:31819770 |
High | No | 635 | Get ORF Coding potential... Type: noncoding Potential: -1.160 Folding energies... MFEI: -33.732 AMFE: -0.621 GC content %: 54.331 | |
| Taestivum_Traes_1AL_3B3B8D793.3 Traes_1AL_3B3B8D793.3 PAC:31819771 |
Low | No | 418 | Get ORF Coding potential... Type: noncoding Potential: -1.136 Folding energies... MFEI: -31.053 AMFE: -0.590 GC content %: 52.632 | |
| Taestivum_Traes_1AL_3B3B8D793.4 Traes_1AL_3B3B8D793.4 PAC:31819772 |
High | No | 915 | Get ORF Coding potential... Type: noncoding Potential: -1.174 Folding energies... MFEI: -25.082 AMFE: -0.568 GC content %: 44.153 | |
| Taestivum_Traes_1AL_3B3B8D793.5 Traes_1AL_3B3B8D793.5 PAC:31819775 |
High | No | 658 | Get ORF Coding potential... Type: noncoding Potential: -1.088 Folding energies... MFEI: -20.775 AMFE: -0.526 GC content %: 39.514 | |
| Taestivum_Traes_1AL_3B3B8D793.6 Traes_1AL_3B3B8D793.6 PAC:31819774 |
High | No | 921 | Get ORF Coding potential... Type: noncoding Potential: -1.176 Folding energies... MFEI: -26.363 AMFE: -0.589 GC content %: 44.734 | |
| Taestivum_Traes_1AL_3B3B8D793.7 Traes_1AL_3B3B8D793.7 PAC:31819776 |
High | No | 411 | Get ORF Coding potential... Type: noncoding Potential: -0.986 Folding energies... MFEI: -31.995 AMFE: -0.609 GC content %: 52.555 | |
| Taestivum_Traes_1AL_3B3B8D793.8 Traes_1AL_3B3B8D793.8 PAC:31819777 |
Low | No | 389 | Get ORF Coding potential... Type: noncoding Potential: -1.408 Folding energies... MFEI: -25.938 AMFE: -0.515 GC content %: 50.386 | |
| Taestivum_Traes_1AL_3B3B8D793.9 Traes_1AL_3B3B8D793.9 PAC:31819778 |
Low | No | 708 | Get ORF Coding potential... Type: noncoding Potential: -0.333 Folding energies... MFEI: -35.918 AMFE: -0.657 GC content %: 54.661 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
