GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_3B7DD6F4F Traes_1AL_3B7DD6F4F	ta_iwgsc_1al_v2_3871979	7247	8422	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_3B7DD6F4F.1 Traes_1AL_3B7DD6F4F.1 PAC:31751732	High	No	664		Get ORF Coding potential... Type: noncoding Potential: -0.502 Folding energies... MFEI: -30.617 AMFE: -0.591 GC content %: 51.807
Taestivum_Traes_1AL_3B7DD6F4F.2 Traes_1AL_3B7DD6F4F.2 PAC:31751733	High	No	680		Get ORF Coding potential... Type: noncoding Potential: -0.374 Folding energies... MFEI: -28.324 AMFE: -0.539 GC content %: 52.500

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).