GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_42A44FEDC Traes_1AL_42A44FEDC	ta_iwgsc_1al_v2_3875826	5419	8151	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_42A44FEDC.3 Traes_1AL_42A44FEDC.3 PAC:31779312	Low	No	596		Get ORF Coding potential... Type: noncoding Potential: -0.546 Folding energies... MFEI: -29.463 AMFE: -0.591 GC content %: 49.832
Taestivum_Traes_1AL_42A44FEDC.6 Traes_1AL_42A44FEDC.6 PAC:31779315	High	No	774		Get ORF Coding potential... Type: noncoding Potential: -1.145 Folding energies... MFEI: -25.052 AMFE: -0.582 GC content %: 43.023

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).