GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_458638D61 Traes_1AL_458638D61	ta_iwgsc_1al_v2_3958894	26064	32551	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_458638D61.5 Traes_1AL_458638D61.5 PAC:31743501	High	No	1492		Get ORF Coding potential... Type: noncoding Potential: -0.728 Folding energies... MFEI: -30.677 AMFE: -0.632 GC content %: 48.525
Taestivum_Traes_1AL_458638D61.7 Traes_1AL_458638D61.7 PAC:31743503	High	No	1345		Get ORF Coding potential... Type: noncoding Potential: -0.577 Folding energies... MFEI: -31.071 AMFE: -0.636 GC content %: 48.848
Taestivum_Traes_1AL_458638D61.8 Traes_1AL_458638D61.8 PAC:31743502	High	No	1366		Get ORF Coding potential... Type: noncoding Potential: -0.920 Folding energies... MFEI: -28.895 AMFE: -0.616 GC content %: 46.925

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).