GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_47374035F Traes_1AL_47374035F	ta_iwgsc_1al_v2_1808286	1	601	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_47374035F.1 Traes_1AL_47374035F.1 PAC:31955537	Low	No	283		Get ORF Coding potential... Type: noncoding Potential: -0.798 Folding energies... MFEI: -39.046 AMFE: -0.585 GC content %: 66.784
Taestivum_Traes_1AL_47374035F.2 Traes_1AL_47374035F.2 PAC:31955536	Low	No	485		Get ORF Coding potential... Type: noncoding Potential: -0.786 Folding energies... MFEI: -36.309 AMFE: -0.597 GC content %: 60.825

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).