GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_4737EEBB2 Traes_1AL_4737EEBB2	ta_iwgsc_1al_v2_3842107	3832	6146	Phytozome	v2.2	Triticum_aestivum	Coding? Yes

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_4737EEBB2.1 Traes_1AL_4737EEBB2.1 PAC:31886098	Low	No	335		Get ORF Coding potential... Type: noncoding Potential: -0.505 Folding energies... MFEI: -34.657 AMFE: -0.556 GC content %: 62.388
Taestivum_Traes_1AL_4737EEBB2.2 Traes_1AL_4737EEBB2.2 PAC:31886096	High	No	1408		Get ORF Coding potential... Type: noncoding Potential: -0.667 Folding energies... MFEI: -29.751 AMFE: -0.624 GC content %: 47.656

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).