Gene
Taestivum Traes 1AL 4E2B761FA
From GreeNC
Gene information
This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.
| Gene alias / name | Chrom. | Start | End | Source | Assembly | Species | Details
|
|---|---|---|---|---|---|---|---|
| Taestivum_Traes_1AL_4E2B761FA Traes_1AL_4E2B761FA |
ta_iwgsc_1al_v2_3892024 | 1915 | 3610 | Phytozome | v2.2 | Triticum_aestivum | Coding? No |
Transcript features
This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.
| Transcript alias / name | Confidence | Pre-miRNA | Length | Sequence | Details
|
|---|---|---|---|---|---|
| Taestivum_Traes_1AL_4E2B761FA.1 Traes_1AL_4E2B761FA.1 PAC:31891770 |
High | No | 847 | Get ORF Coding potential... Type: noncoding Potential: -0.364 Folding energies... MFEI: -29.469 AMFE: -0.601 GC content %: 48.996 | |
| Taestivum_Traes_1AL_4E2B761FA.2 Traes_1AL_4E2B761FA.2 PAC:31891769 |
High | No | 475 | Get ORF Coding potential... Type: noncoding Potential: -0.810 Folding energies... MFEI: -26.379 AMFE: -0.570 GC content %: 46.316 | |
| Taestivum_Traes_1AL_4E2B761FA.3 Traes_1AL_4E2B761FA.3 PAC:31891771 |
High | No | 813 | Get ORF Coding potential... Type: noncoding Potential: -0.898 Folding energies... MFEI: -28.426 AMFE: -0.602 GC content %: 47.232 |
Gene models
Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).
