GreeNC

Gene information

This table contains information about coordinates, assembly and annotation regarding the lncRNA-transcribing gene. In details, it shows whether this this gene transcribes any protein-coding transcript.

Gene alias / name	Chrom.	Start	End	Source	Assembly	Species	Details
Taestivum_Traes_1AL_4EA807C60 Traes_1AL_4EA807C60	ta_iwgsc_1al_v2_3968565	4523	5240	Phytozome	v2.2	Triticum_aestivum	Coding? No

Transcript features

This table shows how a lncRNA has been classified (high/low confidence) or whether it has been classified as pre-miRNA (go to FAQ for classification criteria). Besides, it displays the lncRNA length and sequence as well as information about the ORF, the coding potential calculated by the Coding Potential Calculator (CPC), and the folding energies calculated by RNAfold.

Transcript alias / name	Confidence	Pre-miRNA	Length	Sequence	Details
Taestivum_Traes_1AL_4EA807C60.1 Traes_1AL_4EA807C60.1 PAC:31851137	High	No	718		Get ORF Coding potential... Type: noncoding Potential: -0.859 Folding energies... MFEI: -42.187 AMFE: -0.706 GC content %: 59.749
Taestivum_Traes_1AL_4EA807C60.2 Traes_1AL_4EA807C60.2 PAC:31851138	High	No	324		Get ORF Coding potential... Type: noncoding Potential: -0.934 Folding energies... MFEI: -53.642 AMFE: -0.752 GC content %: 71.296

Gene models

Transcripts can be colored as magenta (coding transcripts), green (high confidence lncRNAs), cyan (low confidence lncRNAs), or salmon (other ncRNAs).